Viewing Gene Lists

You can view and work with gene lists.

Choose Genes List Analysis Tools in the main menu.
Click Analyze a gene list. A page displays the gene lists to which you have access.

Note: You can only view gene lists that you have created or to which you have been granted access. See "Sharing a Gene List".

You can:

Click the Create New Gene List button to upload or manually create a new gene list.

Click the View link in the Details column to view gene list details. See "Viewing Gene List Details" for more information.
Click on a row to view the gene list.
Click the Delete icon to delete a gene list.
Click the Download icon to download a gene list.

Take a look

When you click a gene list, the following tabs display details for that gene list:

List: Shows the list of genes in the selected gene list.
Annotation:Allows you to perform annotation on a gene list.
Location (eQTL): Allows you to view the physical location and transcriptional control locations (eQTL) of your genes on an interactive chromosome map.
Literature: Allows you to perform a literature search for a gene list
Promoter: Allows you to run promoter analysis using oPOSSUM, MEME or Upstream Sequence Extraction on a gene list.
Homologs: Allows you to obtain information regarding chromosomal location in other genomes.
Pathways: Allows you to analyze the hypothetical impact of differences in transcription levels of a set of genes on signaling pathways defined by KEGG (Ogata et al 1999). The Pathways tab only displays when a full change or correlation coefficient is available.
Analysis Statistics: - Allows you to view the raw p-values and the adjusted p-values from the statistical analysis performed to generate this gene list. Depending on the number of groups and the type of analysis used, it may also display group means, F-statistic, mean intensity, correlation coefficient, difference in log base 2 intensity, t-statistic, or parameter estimates. The Analysis Statistics tab only displays if the gene list was created by running an experiment; it contains the statistics related to that analysis.
Expression Values: Allows you to view normalized expression values of your genes in any data set.
Exon Correlations: Allows you to an create an exon correlation heatmap for a specific gene, species, and tissue.
Save As: Allows you to save gene lists translated to other types of identifiers.
Compare: Allows you to compare gene lists, with the option to create, for example, unions or intersections of the gene identifiers.
Share: Allows you to view users who have access to a gene list and to give permission to other users to access your gene list.