PhenoGen - Current Datasets

Current Datasets

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Species	Animal Type	Source Details	Panel	Tissue	Array	Number of Strains	Samples per Strain	Where can I access this data?
Mouse	Inbred Strains	Adult Male	28 inbred strains	Whole Brain	Affymetrix Mouse 430 v2	28	4-6	Precompiled Datasets, Downloads, Custom Datasets
Mouse	Inbred Strains	Adult Male	4 inbred strains	Whole Brain	Affymetrix Mouse Exon Array	4 C57BL/6J, DBA/2J, ILS, ISS	3-36	Custom Datasets
Mouse	Recombinant Inbred Panels	Adult Male	BXD RI	Whole Brain	Affymetrix Mouse 430 v2	32	4-7	Precompiled Datasets, Custom Datasets
Mouse	Recombinant Inbred Panels	Adult Male	LXS RI	Whole Brain	Affymetrix Mouse Exon Array	61	4-6	Precompiled Datasets, Custom Datasets
Mouse	Selected Lines	Adult Male	7 pairs	Whole Brain	Affymetrix Mouse 430 v2	7	4-6	Custom Datasets
Mouse	Genetically Modified	Adult Male	8 pairs	multiple	Affymetrix Mouse 430 v2	8 pairs	3-6	Custom Datasets
Mouse	LXS progenitors	Adult Male		Whole Brain	RNA-Seq of total RNA(Illumina)	2 ILS and ISS	3/strain (70M reads/sample)	Genome/Transcriptome Browser
Rat	Inbred Strains	Adult Male	HXB progenitors	Whole Brain	CodeLink Whole Genome	3	4-6	Custom Datasets
Rat	Inbred Strains	Adult Male	6 Inbred Strains	Whole Brain	Affymetrix Rat Exon Array	6	4	Custom Datasets
Rat	Inbred Strains	Adult Male	6 Inbred Strains	Heart - left ventrical	Affymetrix Rat Exon Array	6	4	Custom Datasets
Rat	Inbred Strains	Adult Male	6 Inbred Strains	Liver	Affymetrix Rat Exon Array	6	4	Custom Datasets
Rat	Inbred Strains	Adult Male	6 Inbred Strains	Brown fat	Affymetrix Rat Exon Array	6	4	Custom Datasets
Rat	Inbred Strains	Kupffer cells (fresh/cultured/MACS)	4 Inbred Strains	Liver (cells)	Affymetrix Rat Exon Array	4	4	Custom Datasets
Rat	Inbred Strains	Hepatic Stellate cells (fresh)	4 Inbred Strains	Liver (cells)	Affymetrix Rat Exon Array	4	4	Custom Datasets
Rat	Inbred Strains	Hepatocyte cells (fresh/cultured)	4 Inbred Strains	Liver (cells)	Affymetrix Rat Exon Array	4	4	Custom Datasets
Rat	Inbred Strains	Sinusoidal endothelial cells (fresh/cultured)	4 Inbred Strains	Liver (cells)	Affymetrix Rat Exon Array	4	4	Custom Datasets
Rat	Recombinant Inbred Panels	Adult Male	HXB RI	Whole Brain	CodeLink Whole Genome	28	4-6	Precompiled Datasets, Downloads, Custom Datasets
Rat	Recombinant Inbred Panels	Adult Male	HXB RI	Whole Brain	Affymetrix Rat Exon Array	23	3-4	Precompiled Datasets, Genome/Transcriptome Browser, Downloads
Rat	Recombinant Inbred Panels	Adult Male	HXB RI	Heart - left ventrical	Affymetrix Rat Exon Array	23	3-4	Precompiled Datasets, Genome/Transcriptome Browser, Downloads
Rat	Recombinant Inbred Panels	Adult Male	HXB RI	Liver	Affymetrix Rat Exon Array	23	3-4	Precompiled Datasets, Genome/Transcriptome Browser, Downloads
Rat	Recombinant Inbred Panels	Adult Male	HXB RI	Brown Fat	Affymetrix Rat Exon Array	21	3-4	Precompiled Datasets, Genome/Transcriptome Browser, Downloads
Rat	Selected Lines	Adult Male	8 pairs	Whole Brain	CodeLink Whole Genome	8	4-6	Custom Datasets
Rat	Selected Lines	Adult Male	6 pairs	Whole Brain	Affymetrix Rat Exon Array	6	4-6	Custom Datasets
Rat	HXB progenitors	Adult Male		Whole Brain	RNA-Seq of total RNA(Helicos)	2 BN-Lx and SHR	3/strain (70M reads/sample)	Genome/Transcriptome Browser, Downloads
Rat	HXB progenitors	Adult Male		Whole Brain	RNA-Seq of total RNA(Illumina)	2 BN-Lx and SHR	3/strain (100M reads/sample)	Genome/Transcriptome Browser, Downloads
Rat	HXB progenitors	Adult Male		Whole Brain	RNA-Seq of PolyA+ RNA(Illumina)	2 BN-Lx and SHR	3/strain (50M reads/sample)	Genome/Transcriptome Browser, Downloads
Rat	HXB progenitors	Adult Male		Whole Brain	RNA-Seq of small RNA(Illumina)	2 BN-Lx and SHR	3/strain	Genome/Transcriptome Browser, Downloads
Rat	HXB progenitors	Adult Male		Liver	RNA-Seq of total RNA(Illumina)	2 BN-Lx and SHR	3/strain (80M reads/sample)	Genome/Transcriptome Browser
Rat	HXB progenitors	Adult Male		Liver	RNA-Seq of small RNA(Illumina)	2 BN-Lx and SHR	2-3/strain	Genome/Transcriptome Browser
Rat	HXB progenitors	Adult Male		Heart	RNA-Seq of total RNA(Illumina)	2 BN-Lx and SHR	4/strain (90M reads/sample)	Genome/Transcriptome Browser
Rat	HXB progenitors	Adult Male		Heart	RNA-Seq of small RNA(Illumina)	2 BN-Lx and SHR	3/strain	Genome/Transcriptome Browser
Rat	HXB progenitors	Adult Male		Liver	Full genome sequencing	4	2/strain	Genome/Transcriptome Browser, Downloads