Demo/Screen Shots
Weighted Gene Co-expression Network Analysis (WGCNA)
Feature List
- Available as a new tab under any gene list for both Mouse and Rat Brain
- Module View:
- Transcripts both Ensembl Annotated and RNA-Seq reconstructed
- Transcripts connectedness showing positive and negative correlation of transcript expression.
- View graphic form and CSV exportable table form.
- eQTL Module View:
- View CIRCOS plot:
- Genome with regions below the selected P-value cutoff highlighted.
- Customizable with include/exclude chromosomes and adjust P-value cutoff.
- View graphic form and CSV exportable table form.
- CSV exportable table form with SNP name/location and P-value.
- Gene Ontology View:
- View an interactive expandable sunburst plot of each GO Domain(Biological Process, Molecular Function, and Cellular Component). Provides a summary of all the GO terms assigned to genes in the module.
- View graphic form and CSV exportable table form. Both are interactive and can be used to explore the GO term tree.
- miRNA targeting (multiMiR) View:
- View/Filter miRNAs that target genes in the module. Visualize targets of miRNAs and the correlation between genes targeted. Filter to look at specific miRNAs or miRNAs targeting specific genes.
- View graphic form and CSV exportable table form.
