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Performing Annotation
- Choose Genes List Analysis Tools in the main menu.
- Click Analyze a gene list. A page displays the gene lists to
which you have access.
- Click
the gene list for which you want to perform annotation.
- Click
the Annotation tab. The Annotation page displays and lists
the equivalent ID from five different ID types:
- Official Symbol
- RefSeq
- MGI (Mouse Genome Informatics),
RGD (Rat Genome Database), or Fly Base
- UniProt (Swiss Prot)
- UC Santa Cruz (University
of California, Santa Cruz)
It also lists:
- Genetically Modified
Animal Available
- QTLs
- Genetic Variations
- Allen Brain Atlas (if
applicable)
You can:
- Click the Download
icon to download annotation information for the gene list.
- Click any link in a cell
to open the website or information page for the ID you selected. If there
are multiple links in a cell, each link opens a related page.
The Accession IDs display on the left, and the equivalent IDs for these
genes from six specified resources are returned; Official gene symbol,
NCBI's RefSeq, Jackson Laboratory's Mouse Genome Informatics (MGI), SwissProt's
UniProt, University of California Santa Cruz, and Ensembl's TranscriptSNPView.
These corresponding IDs are linked to their respective databases. When
you click a link, further annotation is displayed in a new window. In
addition to these links, if there are any genetically modified mice available
for a particular gene, information from the database of genetically modified
mice (maintained by MGI) is provided. Similarly, a link to PhenoGen eQTL
data for a particular gene is also provided, if available. For mouse gene
lists, a link to the Allen Brain Atlas may also be displayed for a specific
gene. You can download the Basic Annotation information.
See Also
Annotation
Overview
Using
More Annotation Options