PhenoGen Informatics
The site for quantitative genetics of the transcriptome.

Summer of Rat Genomics and Genetics Workshop - Aug 2nd-3rd, 2019 - Colorado - NIDA Center for Omics, Systems Genetics and the Addictome
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Working...
Working...Genes should load within 5-10 seconds. Regions depend on the size(ex. 5 Megabases may take ~1 minute).
1. Enter a gene identifier(e.g. gene symbol, probe set ID, Ensembl ID, etc.) in the gene field.
or
Enter a region such as
chr1:1-50000 is Chromosome 1 @ bp 1-50,000.
chr1:5000+-2000 is Chromosome 1 @ bp 3,000-7,000.
chr1:5000+2000 is Chromosome 1 @ bp 5,000-7,000.
chr1:50.126-51.345 is Chromosome 1 @ 50,126,000-51,345,000
chr1:50.15+-100.0k is chromosome 1 @ 50,050,000-50,250,000
or
Click on the Translate Region to Mouse/Rat to find regions on the Mouse/Rat genome that correspond to a region of interest in the Human/Mouse/Rat genome.
2. Choose a species.
3. Click Get Transcription Details.





Or
Not sure where to start: watch a quick navigation demonstration or view the help images again
Region Image
View:
Navigation Hints: Hold mouse over areas of the image for available actions.

Track Details
Genes with an eQTL in this region
WGCNA
Expression
Region Summary
Track List:
Break down of track count*

*Note: Depending on the track settings some features may not be displayed and will not be reflected in the image above.
Features in Selected Track
Selected Feature Image